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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20417832_20418036_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20417832 - 20418036
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGATCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
EYAKLKYSLQRILIVDWDVH
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.9
0.56
0.9
69.5
36.6
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998