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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20418142_20418218_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20418142 - 20418218
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGGTATAAAACT
Flanking Amino Acid:
GKVCNGMALVRPPGHHSQRN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
72.5
0.51
0.9
69.9
40.6
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
45.9
-0.2
2
66.45
44

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998