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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20419087_20420749_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20419087 - 20420749
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGAAAT
5'SS Class:
major
3'SS Sequence:
CTCTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GCTTAATTAAGT
Flanking Amino Acid:
GTEEEILLVHSSEHLEIAKS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
73.4
37.3
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
36.6
-1.5
2.9
49
46.8
Minor BPS
49.7
0.06
2.1
70.99
45.3

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998