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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20420885_20421755_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20420885 - 20421755
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
CACTTATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TATCACTTATTT
Flanking Amino Acid:
EMTSHKLLWDDPICDIEVPE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
74.3
0.55
0.9
66
39.6
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
57
0.3
1.8
76.03
40.3

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998