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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20427074_20427840_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20427074 - 20427840
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGGCCA
5'SS Class:
weak_major
3'SS Sequence:
CCAGAGATACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TATACTTTATGC
Flanking Amino Acid:
HVRTFLLPWLQNKRDAVPSL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
47.1
42.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
45.9
-0.2
1.1
34.9
38.6
Minor 5ss
39
-1.2
3.2
52.5
44.5
Minor BPS
50
-0
1.9
64.01
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004018
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004124
20427018 - 20431068
4051