Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20445510_20446329_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20445510 - 20446329

Intron Length:

820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTTTA

5'SS Class:

major

3'SS Sequence:

TGTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

CAGACAGCAACA

Flanking Amino Acid:

NMDLPLDEWKRITYKEILNF

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.3

71.1

37.5

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

85.2

0.79

0.9

76.9

42.1

Minor 5ss

39.3

-1.2

2.9

44.6

43.6

Minor BPS

38.9

-0.8

2.2

46.81

42.4

Associated Gene:

Gene:

MAPK12

Ensembl Gene ID:

ENSAPLG00000004157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004282

20445328 - 20477274

31947