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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20447728_20448466_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20447728 - 20448466
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATTAATT
Flanking Amino Acid:
DFVQKLQSQDAKNYIKSLPK
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
63.9
0.51
1.8
82.17
39.2

Associated Gene:

Gene:
MAPK12
Ensembl Gene ID:
ENSAPLG00000004157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004282
20445328 - 20477274
31947