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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20450786_20451437_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20450786 - 20451437
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TATTCAGTAACT
Flanking Amino Acid:
ILNWMHYTQTVDIWSVGCIM
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
61.8
0.45
2.3
86.69
38.7

Associated Gene:

Gene:
MAPK12
Ensembl Gene ID:
ENSAPLG00000004157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004282
20445328 - 20477274
31947