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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20458073_20463795_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20458073 - 20463795
Intron Length:
5723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
LVYQMLKGLKYIHSSGIIHR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
57
42
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
40.6
-1
2.8
50.8
45.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
MAPK12
Ensembl Gene ID:
ENSAPLG00000004157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004282
20445328 - 20477274
31947