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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20463908_20467596_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20463908 - 20467596
Intron Length:
3689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTTAT
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
PDVTLEKFNDFYLVMPFMGT
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
55.8
0.14
1.4
49.4
46
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
MAPK12
Ensembl Gene ID:
ENSAPLG00000004157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004282
20445328 - 20477274
31947