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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20467656_20476526_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20467656 - 20476526
Intron Length:
8871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
CCCCTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTCCCCTATTT
Flanking Amino Acid:
RLLKHMKHENVIGILDVFTP
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.2
0.66
0.8
76
31.3
Minor 5ss
35.5
-1.6
2.8
39.4
39.7
Minor BPS
51.4
0.12
2
74.09
42.9

Associated Gene:

Gene:
MAPK12
Ensembl Gene ID:
ENSAPLG00000004157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004282
20445328 - 20477274
31947