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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20487110_20490657_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20487110 - 20490657
Intron Length:
3548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
CCCCTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
CCCTCCCTACAG
Flanking Amino Acid:
NKERTIDEWKELTYEEVISF
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
75.2
0.57
0.7
68
25.7
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
43
-0.6
2.1
44.58
47.2

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899