About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20490832_20492237_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20490832 - 20492237
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTGACTTTAATC
Flanking Amino Acid:
KAVFRGANPLAVDLLEKMLI
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.5
0.82
0.6
85.6
21.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
66.1
0.48
1.3
67.58
38.4

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899