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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20496833_20496955_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20496833 - 20496955
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTCTCTTCAATT
Flanking Amino Acid:
MLNWMHYNQTVDIWSVGCIM
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
72.3
0.5
1
69.1
41.3
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
63.4
0.5
1.6
75.4
42.3

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899