Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20499502_20499633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20499502 - 20499633

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTGGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TGGTCTCTGACA

Flanking Amino Acid:

YIHSAGIIHRDLKPSNLAVN

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

73.7

33.1

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

74.1

0.54

68.3

42.2

Minor 5ss

34.6

-1.8

2.7

33.3

41.7

Minor BPS

57.1

0.22

1.7

67.73

38.7

Associated Gene:

Gene:

MAPK11

Ensembl Gene ID:

ENSAPLG00000004462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004632

20487036 - 20517934

30899