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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20499664_20502096_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20499664 - 20502096
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTT
5'SS Class:
major
3'SS Sequence:
TTTTATGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CAAACCTTACCT
Flanking Amino Acid:
LIYQLLRGLKYIHSAGIIHR
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69.9
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.9
80.8
36.4
Minor 5ss
34.2
-1.8
3.9
55.6
48.6
Minor BPS
58.6
0.35
1.7
70.93
45.3

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899