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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20502209_20503387_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20502209 - 20503387
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATTTCTTATAT
Flanking Amino Acid:
PATSIENFNEVYLVTNLMGA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
59.5
0.38
1.7
75.14
41

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899