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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20503447_20504386_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20503447 - 20504386
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATAAAACT
Flanking Amino Acid:
RLLKHMKHENVIGLLDVFTP
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.4
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
33.4
-1.9
3.2
39.3
39.8
Minor BPS
49.2
0.02
2.1
76.27
40.2

Associated Gene:

Gene:
MAPK11
Ensembl Gene ID:
ENSAPLG00000004462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004632
20487036 - 20517934
30899