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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20579880_20583381_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20579880 - 20583381
Intron Length:
3502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGATTCTAAACA
Flanking Amino Acid:
YQYTNKYYDEIINALEEDPA
Intron Amino Acid Position:
1812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
64.6
0.45
1.7
72.6
39.2

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867