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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20583457_20585456_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20583457 - 20585456
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTGTTTAACA
Flanking Amino Acid:
MNTHLAEISRAHTDSLNTLV
Intron Amino Acid Position:
1787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.8
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.8
0.63
1
73.3
40.9
Minor 5ss
36.6
-1.5
3
41.3
44.8
Minor BPS
70.4
0.64
1.7
79.83
36.4

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867