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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20587005_20587605_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20587005 - 20587605
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACCT
Flanking Amino Acid:
EDTIHIWKTNSLPLRFWVNI
Intron Amino Acid Position:
1690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.3
0.73
0.8
76.1
32.4
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
79.4
1
1.5
95.32
31.5

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867