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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20587767_20589421_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20587767 - 20589421
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
AATTCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCTCTTAAAT
Flanking Amino Acid:
IYLTRLLSVKGTLQQFVDNF
Intron Amino Acid Position:
1637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72
0.49
0.9
68
38.1
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
77.3
0.93
1.3
90.72
32

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867