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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20589577_20594591_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20589577 - 20594591
Intron Length:
5015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
EDNQQDVPGERHALLEDENK
Intron Amino Acid Position:
1585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.2
0.61
0.9
69.6
41.4
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867