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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20596857_20599936_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20596857 - 20599936
Intron Length:
3080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTCTTATTAACC
Flanking Amino Acid:
LGDDVEYTQLTVNVYVQDGG
Intron Amino Acid Position:
1471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
65
0.45
1.6
71.91
39

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867