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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20600263_20601027_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20600263 - 20601027
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAATG
5'SS Class:
major
3'SS Sequence:
GCTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
GTACCCCTAACA
Flanking Amino Acid:
VAKNPKLMLRRSETVVERML
Intron Amino Acid Position:
1399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
69.3
41.1
Major BPS
58.7
0.22
1.2
67
38
Major PPT
85.5
0.8
0.7
84.6
30.4
Minor 5ss
39.5
-1.2
2.8
49.3
46.6
Minor BPS
62.5
0.39
1.7
72.12
38.8

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867