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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20601210_20602276_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20601210 - 20602276
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTATTTGATT
Flanking Amino Acid:
LLNSKSFLINFIHTLENQRE
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
64.1
0.53
1.5
79.36
37.3

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867