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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20602507_20604713_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20602507 - 20604713
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATC
Flanking Amino Acid:
VRDRCKKEFTDLMIEMEDHT
Intron Amino Acid Position:
1262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
65.5
0.35
1
55.7
43.7
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
68.3
0.55
1.4
77.75
32.1

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867