About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20607367_20609112_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20607367 - 20609112
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TCATTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CATTTCTTATAG
Flanking Amino Acid:
PEAGKASLKRFDGRSVTRLN
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.1
36
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81.4
0.71
0.8
76.7
31.8
Minor 5ss
44.4
-0.6
2.8
53.5
43.8
Minor BPS
51.5
-0
1.8
57.24
44.2

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867