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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20611828_20624261_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20611828 - 20624261
Intron Length:
12434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTCTAAATT
Flanking Amino Acid:
SPSEVQFTYQEPHPSGIRPE
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.78
0.7
79.7
25.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
70.4
0.72
1.6
85.57
35

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867