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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20640495_20640963_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20640495 - 20640963
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TTTATCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATTCTGAATA
Flanking Amino Acid:
STEDVIKQNMEEECPQFLNP
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.5
0.71
0.8
73.8
36.7
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
69.9
0.62
1.3
76.86
33.8

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867