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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20644273_20646096_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20644273 - 20646096
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGACAG
5'SS Class:
major
3'SS Sequence:
ATATTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATATAT
Flanking Amino Acid:
RNMSRRAPATVKLTVSPLPA
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55.5
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
0.9
73.6
41
Minor 5ss
37.9
-1.4
3.1
48.3
47.3
Minor BPS
50.4
0.09
1.9
77.55
38.9

Associated Gene:

Gene:
PLXNB2
Ensembl Gene ID:
ENSAPLG00000004968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005223
20579775 - 20824641
244867