Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20648473_20652303_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20648473 - 20652303

Intron Length:

3831

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

AGATACGTCATG

Flanking Amino Acid:

ENLYVMTTDKVHLLPVQDCF

Intron Amino Acid Position:

474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

77.6

33.1

Major BPS

74.1

0.6

38.9

Major PPT

77.2

0.61

0.8

70.3

36.4

Minor 5ss

38.5

-1.3

3.4

55.5

48.6

Minor BPS

39.2

-0.9

2.4

44.26

41.6

Associated Gene:

Gene:

PLXNB2

Ensembl Gene ID:

ENSAPLG00000004968

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005223

20579775 - 20824641

244867