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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20910076_20913029_F

Intron Information:

Intron Rank:
140384
Intron Class:
major
Intron Phase:
Intron Coordinates:
20910076 - 20913029
Intron Length:
2954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTGTTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.2
0.84
0.8
82
33.9
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
49.4
0.04
1.8
69.02
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027484
20909580 - 20914261
4682