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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20977465_20978776_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
20977465 - 20978776
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
CATTTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AAAGCATTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.7
0.67
0.8
77.3
31
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
56.7
0.29
1.7
69.95
40.7

Associated Gene:

Gene:
ZNF800
Ensembl Gene ID:
ENSAPLG00000014433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015031
20968184 - 20978777
10594