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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20977465_21016399_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20977465 - 21016399
Intron Length:
38935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
GRSTRSKAVVWNGRRNKEGD
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
50.1
0
1.3
58.9
35.8
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ZNF800
Ensembl Gene ID:
ENSAPLG00000014433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021026
20968184 - 21016478
48295