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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21023819_21081708_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21023819 - 21081708
Intron Length:
57890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGAATTACTT
Flanking Amino Acid:
MVANILRLFKIPQISYASTA
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
48.1
-0
2.1
73.83
43.2

Associated Gene:

Gene:
GRM8
Ensembl Gene ID:
ENSAPLG00000013904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014497
21016400 - 21376849
360450