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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2102948_2164880_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2102948 - 2164880
Intron Length:
61933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGAAAA
U12 Branch Point Sequence:
AAAAGCCTGACA
Flanking Amino Acid:
EHLYIMSEKQLTRVPVESCS
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
44.7
-0.3
1.1
45
34.1
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
43.7
-0.5
2
52.2
38.9

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544