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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21174925_21233361_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21174925 - 21233361
Intron Length:
58437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TTGAAGTAAACA
Flanking Amino Acid:
KRNSNIKKCTGLERIARDSA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
84.5
0.78
0.6
84.4
23.4
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
44
-0.4
2.4
60.8
45

Associated Gene:

Gene:
GRM8
Ensembl Gene ID:
ENSAPLG00000013904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014497
21016400 - 21376849
360450