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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21371127_21376799_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21371127 - 21376799
Intron Length:
5673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTTGTTTACA
Flanking Amino Acid:
TELCESLETNTSSTKTTYVS
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
51.4
0.04
2.3
71.5
40.4

Associated Gene:

Gene:
GRM8
Ensembl Gene ID:
ENSAPLG00000013904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014497
21016400 - 21376849
360450