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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2164982_2201797_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2164982 - 2201797
Intron Length:
36816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCCATTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCATTTTAACC
Flanking Amino Acid:
PHCGWCVLHNTCTRKERCER
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.3
0.43
0.9
67.6
37.6
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
64.3
0.43
1.3
67.05
38.7

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544