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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21760248_21762439_F

Intron Information:

Intron Rank:
144604
Intron Class:
major
Intron Phase:
Intron Coordinates:
21760248 - 21762439
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
TTGGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAG
U12 Branch Point Sequence:
TTTGGCTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
46.7
-0.2
1.7
60.8
45.4
Major PPT
80
0.68
1
76.9
42.1
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
56.2
0.19
2.2
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045512
21759949 - 21766331
6383
ENSAPLT00000024005
21759949 - 21767010
7062