About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21762548_21765289_F

Intron Information:

Intron Rank:
144605
Intron Class:
major
Intron Phase:
Intron Coordinates:
21762548 - 21765289
Intron Length:
2742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTGTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACTTTCCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
32.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
44.7
-0.6
2.8
61.4
37.9
Minor BPS
60.6
0.31
1.6
68.79
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045512
21759949 - 21766331
6383
ENSAPLT00000024005
21759949 - 21767010
7062