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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21839139_21839969_R

Intron Information:

Intron Rank:
138568
Intron Class:
major
Intron Phase:
Intron Coordinates:
21839139 - 21839969
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.9
77.6
36.5
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
67.6
0.63
1.7
85.39
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032510
21837094 - 21842311
5218
ENSAPLT00000030529
21837094 - 21841099
4006