Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21872409_21881613_R

Intron Information:

Intron Rank:

153627

Intron Class:

major

Intron Phase:

Intron Coordinates:

21872409 - 21881613

Intron Length:

9205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCTGTAAT

5'SS Class:

major

3'SS Sequence:

ATGGCAATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AAAGCATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.3

79.7

35.4

Major BPS

0.85

0.9

39.9

Major PPT

65.9

0.36

60.2

44.4

Minor 5ss

38.9

-1.2

2.6

51.1

45.4

Minor BPS

58.1

0.25

1.7

65.56

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042984

21871896 - 21881738

9843