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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21912914_21940631_R

Intron Information:

Intron Rank:
136796
Intron Class:
major
Intron Phase:
Intron Coordinates:
21912914 - 21940631
Intron Length:
27718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAGATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.2
31.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
41.5
-0.9
3.2
58
41.7
Minor BPS
54.4
0.13
1.7
66.43
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021101
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028797
21912565 - 21942365
29801