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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21936910_21970924_F

Intron Information:

Intron Rank:
129566
Intron Class:
major
Intron Phase:
Intron Coordinates:
21936910 - 21970924
Intron Length:
34015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
GAATTTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACCTCCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
75.8
0.58
0.9
73.3
41.4
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
66.5
0.6
1.4
75
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019723
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035760
21932577 - 21971113
38537