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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21989777_21993167_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21989777 - 21993167
Intron Length:
3391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
GLDYTNKYFQGVVILSYPQT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.1
78.4
32.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
46
-0.4
2.6
61.1
43.8
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339