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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_21993241_21994667_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21993241 - 21994667
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTCCCTATAG
Flanking Amino Acid:
GTDFFKIVLQDNSCARIDSI
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.3
36.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
86.3
0.82
0.6
81.7
23.4
Minor 5ss
37.6
-1.4
3.6
58.4
46.1
Minor BPS
53.7
-0
2.1
69.74
43

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339