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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22000144_22000943_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22000144 - 22000943
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ACTTCTGTAATC
Flanking Amino Acid:
VSEEAGSAIYIYAQPSTTAS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
60.2
44.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
33.4
-1.9
3.4
44
44.1
Minor BPS
56.9
0.2
2
67.85
38.7

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339