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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22000989_22002162_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22000989 - 22002162
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CATGCCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTCCCTTAATT
Flanking Amino Acid:
STTASETASVSVAPKYVYTP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.4
0.48
0.9
62.1
39.5
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
82.5
1.1
1.1
90.65
32.5

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339